Squiggle¶
Squiggle is a two-dimensional DNA sequence visualization library that can turn this:
>lcl|NC_000011.10_cds_NP_000509.1_1 [gene=HBB]
ATGGTGCATCTGACTCCTGAGGAGAAGTCTGCCGTTACTGCCCTGTGGGGCAAGGTGAACGTGGATGAAG
TTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTGGTCTACCCTTGGACCCAGAGGTTCTTTGAGTCCTTTGG
GGATCTGTCCACTCCTGATGCTGTTATGGGCAACCCTAAGGTGAAGGCTCATGGCAAGAAAGTGCTCGGT
GCCTTTAGTGATGGCCTGGCTCACCTGGACAACCTCAAGGGCACCTTTGCCACACTGAGTGAGCTGCACT
GTGACAAGCTGCACGTGGATCCTGAGAACTTCAGGCTCCTGGGCAACGTGCTGGTCTGTGTGCTGGCCCA
TCACTTTGGCAAAGAATTCACCCCACCAGTGCAGGCTGCCTATCAGAAAGTGGTGGCTGGTGTGGCTAAT
GCCCTGGCCCACAAGTATCACTAA
into this:
Installation¶
If you don’t have Python 3.4 or greater installed, be sure to get it. If you do, install Squiggle with
pip:
$ pip install squiggle
Or alternatively, if you want to get the latest development version:
$ pip install git+https://github.com/Lab41/squiggle.git
Usage¶
Using squiggle is as easy as:
$ squiggle your_sequence.fasta
For full a full rundown on how to use Squiggle, take a look at the User Guide.
Citation¶
To be determined!